[Rmannounce] RepeatMasker Patch - Crossmatch 1.080812 Bugfix

Robert Hubley rhubley at systemsbiology.org
Wed Jun 8 14:40:55 PDT 2011


We have a patch for recent versions of RepeatMasker 3.2.X and higher 
which allows the program to work with the most-recent version of 
Crossmatch ( 1.080812 ). Without this patch the program will 
intermittently report "FastaDB::substr - Error index out of bounds! at 
RepeatMasker line 4969" when used with this version of Crossmatch. The 
patch is easy to apply. Simply replace the CrossmatchSearchEngine.pm 
module in your RepeatMasker directory with this one: 
http://www.repeatmasker.org/CrossmatchSearchEngine.pm 
<http://www.repeatmasker.org/CrossmatchSearchEngine.pm>

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