[Rmannounce] RepeatMasker, RepeatMasker Libraries, and RepeatScout Updates

[Robert Hubley]

RepeatMasker open-3.2.5 was released ( 
http://www.repeatmasker.org/RMDownload.html ) along with an updated set 
of repeat libraries ( RM-20080611, RepBase 13.02 available from GIRI ). 
This release includes several fixes to the alignment output format ( 
single "X"s in the query portion of the alignment, incorrect sequence 
indexes in lines containing only gap characters "-" ) and an updated set 
of libraries for the RepeatProteinMask program. In addition a new 
release of RepeatScout is available for download ( 
http://repeatscout.bioprojects.org/ ). The RepeatScout 
filter-stage-1.prl script skipped the last sequence in the input file. 
Thanks to Gyorgy Abrusan for reporting this.